Bioconductor Gene regulatory network

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Graph gene regulatory network node influence gene ranking

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by omarrafiqued ▴ 50

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differential gene expression gene expression clustering gene regulatory network normalization

7.2 years ago sagnik • 0

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gene regulatory network

7.2 years ago johnnytam100 • 0

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Bayesian network RNA-seq Gene regulatory network

7.6 years ago nancydong20 ▴ 10

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transcription factor tf activation gene regulatory network gene expression

updated 8.3 years ago by caroline.green.c91 • 0 • written 8.3 years ago by Diwan • 0

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Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0

I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …

Comment: DiffBind can't find a DAR by Mengjun • 0

Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…

Comment: European Bioconductor Conference 2023 planning by ht • 0

Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirectportal.com • 0

This is a great post. I like this topic. I found many interesting things from this site. Thanks for posting this again https://www.njmcdire…

Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA

GSVA ssGSEA vs. Broad implementation of ssGSEA

Comment: biomaRt server error, and mirrors do not help

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